University of California San Francisco

Kratz Lab Publications

Kratz Lab Publications
  1. Abstract C025: Identification of cell-cell signaling programs across the tumor-tumor microenvironment ecosystem and associated with clinical status in neoadjuvant osimertinib treated patient samples revealed by spatial profiling.
    2024 | UCSF Research Profile
  2. PET Standardized Uptake Value May Influence Surgical Planning for Clinical Stage IA Non-Small Cell Lung Cancer.
    2023 | PubMed
  3. Discovering dominant tumor immune archetypes in a pan-cancer census.
    2021 | PubMed
  4. Improved outcomes and staging in non-small-cell lung cancer guided by a molecular assay.
    2021 | PubMed
  5. MO01.13 Molecular Risk Stratification is Independent of EGFR Mutation Status in Identifying Early Stage Non-Squamous Non-Small Cell Lung Cancer Patients at Risk for Recurrence and Likely to Benefit from Adjuvant Chemotherapy.
    2021 | UCSF Research Profile
  6. P1.14-58 A Phase II Study to Evaluate Neoadjuvant Osimertinib for Surgically Resectable, EGFR-Mutant Non-Small Cell Lung Cancer.
    2019 | UCSF Research Profile
  7. P3.03-24 Incorporation of a Molecular Prognostic Classifier Improves Conventional Non-Small Cell Lung Cancer Staging.
    2018 | UCSF Research Profile
  8. High risk, high reward: An analysis of outcomes for candidates awaiting hepatic re-transplantation.
    2016 | PubMed
  9. Prognostic assay in small, node-negative non-small cell lung cancer--reply.
    2013 | PubMed
  10. Cancer stem cells in lung tumorigenesis.
    2010 | PubMed
  11. P1.07.40 Detection of ctDNA Prior to Neoadjuvant Osimertinib Treatment Correlates With Decreased EFS in EGFR-Mutated NSCLC.
    2025 | UCSF Research Profile
  12. Neoadjuvant Osimertinib for the Treatment of Stage I-IIIA Epidermal Growth Factor Receptor-Mutated Non-Small Cell Lung Cancer: A Phase II Multicenter Study.
    2024 | PubMed
  13. 287 Genomic and Immunologic Characterization of Lung Adenocarcinoma in Never Smokers vs. Smokers.
    2023 | UCSF Research Profile
  14. Perioperative Lung Resection Outcomes After Implementation of a Multidisciplinary, Evidence-based Thoracic ERAS Program.
    2021 | PubMed
  15. SARS-CoV-2 infection studies in lung organoids identify TSPAN8 as novel mediator.
    2021 | PubMed
  16. Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing.
    2020 | PubMed
  17. Applications of Next-Generation Sequencing in Neoantigen Prediction and Cancer Vaccine Development.
    2019 | PubMed
  18. Surgical Management of Pulmonary Mucormycosis in Third-Trimester Pregnancy.
    2018 | PubMed
  19. The race to liver transplantation: a comparison of patients with and without hepatocellular carcinoma from listing to post-transplantation.
    2015 | PubMed
  20. Development of a rapid and practical mutation screening assay for human lung adenocarcinoma.
    2012 | PubMed
  21. Integration of flow-dependent endothelial phenotypes by Kruppel-like factor 2.
    2005 | PubMed
  22. An international, multicenter, prospective randomized trial of adjuvant chemotherapy for stage Ia-IIa non-small cell lung cancer identified as high-risk by a 14-gene molecular assay.
    2025 | UCSF Research Profile
  23. Quantitative Polymerase Chain Reaction and Precision Medicine.
    2023 | UCSF Research Profile
  24. Tracheal Reconstruction Using Endotracheal Stent and Pectoralis Major Muscle Flap.
    2022 | PubMed
  25. P26.02 A Phase II Trial of Neoadjuvant Osimertinib for Surgically Resectable EGFR-Mutant Non-Small Cell Lung Cancer: Updated Results.
    2021 | UCSF Research Profile
  26. Bioinformatic Approaches to Validation and Functional Analysis of 3D Lung Cancer Models.
    2021 | PubMed
  27. Esophagectomy Outcomes after Implementation of an Enhanced Recovery after Surgery Program.
    2019 | UCSF Research Profile
  28. Giant right coronary artery aneurysm presenting as cardiac tamponade.
    2018 | PubMed
  29. OA19.06 Adjuvant Chemotherapy Decisions Based on Molecular Risk Status Improves Outcomes in Early Stage, Non-Small Cell Lung Cancer.
    2017 | UCSF Research Profile
  30. Analytical validation of a practical molecular assay prognostic of survival in nonsquamous non-small cell lung cancer.
    2013 | PubMed
  31. Child neurology: Brachial plexus birth injury: what every neurologist needs to know.
    2011 | PubMed
  32. Catalysis of peptide dissociation from class II MHC-peptide complexes.
    1999 | PubMed
  33. Epigenetic de-repression of basal cell metaplasia in aging AT2 cells is a risk factor for idiopathic pulmonary fibrosis (IPF).
    2026 | PubMed
  34. 8P Precision medicine drug testing platform to guide the treatment of EML4-ALK fusion lung cancers.
    2024 | UCSF Research Profile
  35. Phase II trial of neoadjuvant osimertinib for surgically resectable EGFR -mutated non-small cell lung cancer.
    2023 | UCSF Research Profile
  36. Genetic and immunologic features of recurrent stage I lung adenocarcinoma.
    2021 | PubMed
  37. SARS-CoV-2 infection and venous thromboembolism after surgery: an international prospective cohort study.
    2021 | PubMed
  38. Elective Cancer Surgery in COVID-19-Free Surgical Pathways During the SARS-CoV-2 Pandemic: An International, Multicenter, Comparative Cohort Study.
    2020 | PubMed
  39. Differential gene expression identifies KRT7 and MUC1 as potential metastasis-specific targets in sarcoma.
    2019 | PubMed
  40. Propensity Matched Analysis of Perioperative Outcomes in Robotic-Assisted Thoracic Surgery, Video Assisted Thoracic Surgery, and Open Lung Resections.
    2018 | UCSF Research Profile
  41. High risk, high reward: An analysis of outcomes for candidates awaiting hepatic re-transplantation.
    2016 | PubMed
  42. The role of stem cells in airway repair: implications for the origins of lung cancer.
    2012 | PubMed
  43. Genomic prognostic models in early-stage lung cancer.
    2009 | PubMed
  44. Never Fear, the Robot Is Here: Robotic Resection for a Giant Thymoma.
    2025 | PubMed
  45. A prognostic model for use before elective surgery to estimate the risk of postoperative pulmonary complications (GSU-Pulmonary Score): a development and validation study in three international cohorts.
    2024 | PubMed
  46. Comparative genomics between matched solid and lepidic portions of semi-solid lung adenocarcinomas.
    2023 | PubMed
  47. Multiomic Characterization of Stage I Lung Adenocarcinoma Reveals Distinct Genetic and Immunologic Features of Recurrent Disease.
    2021 | UCSF Research Profile
  48. Resectability, Recurrence, and Risk Stratification of Giant Solitary Fibrous Tumors in the Thoracic Cavity.
    2021 | PubMed
  49. Pulmonary Embolus of Benign Liver Tissue Following Partial Hepatectomy.
    2020 | UCSF Research Profile
  50. Quantitative Polymerase Chain Reaction for Companion Diagnostics and Precision Medicine Application.
    2019 | UCSF Research Profile
  51. Adjuvant Chemotherapy Guided by Molecular Profiling and Improved Outcomes in Early Stage, Non-Small-Cell Lung Cancer.
    2017 | PubMed
  52. Prognostic and Predictive Biomarker Signatures.
    2014 | UCSF Research Profile
  53. A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies.
    2012 | PubMed
  54. Fluid Mechanical Forces as Extrinsic Modifiers of Endothelial Function.
    2005 | UCSF Research Profile
  55. Letter: Commentary: Trans-Sternal Multilevel Corpectomy for Cervicothoracic Renal Cell Metastasis: 2-Dimensional Operative Video.
    2024 | PubMed
  56. Treatments for dengue: a Global Dengue Alliance to address unmet needs.
    2023 | PubMed
  57. Outcomes of gynecologic cancer surgery during the COVID-19 pandemic: an international, multicenter, prospective CovidSurg-Gynecologic Oncology Cancer study.
    2022 | PubMed
  58. SARS-CoV-2 vaccination modelling for safe surgery to save lives: data from an international prospective cohort study.
    2021 | PubMed
  59. Commentary: Cardiothoracic surgery training: Global challenges without universal solutions.
    2021 | PubMed
  60. MA06.09 Timing of Driver Mutation Development and the Genetic Evolution of Semi-Solid Lung Nodules into Early NSCLC.
    2019 | UCSF Research Profile
  61. P2.16-12 Expanded Data Confirm Molecular Testing Identifies Lung Adenocarcinoma Patients, Including Stage IA, Who Benefit from Adjuvant Chemotherapy.
    2018 | UCSF Research Profile
  62. P1.03-066 Incorporation of a Molecular Prognostic Classifier Improves Conventional Non-Small Cell Lung Cancer TNM Staging Topic: Staging.
    2017 | UCSF Research Profile
  63. International trial of adjuvant therapy in high risk stage I non-squamous cell carcinoma identified by a 14-gene prognostic signature.
    2013 | PubMed
  64. Downregulation of EMX2 is associated with clinical outcomes in lung adenocarcinoma patients.
    2011 | PubMed
  65. Genomic organization and structure of Bruton agammaglobulinemia tyrosine kinase: localization of mutations associated with varied clinical presentations and course in X chromosome-linked agammaglobulinemia.
    1994 | PubMed
  66. Outpatient opioid use after minimally invasive surgery for lung cancer: a Surveillance, Epidemiology, and End Results-Medicare cohort study.
    2025 | PubMed
  67. Precision medicine-based platform to guide the treatment of EML4-ALK driven lung cancers and other NSCLC in real time.
    2024 | UCSF Research Profile
  68. Transcriptional space-time mapping identifies concerted immune and stromal cell patterns and gene programs in wound healing and cancer.
    2023 | PubMed
  69. Death following pulmonary complications of surgery before and during the SARS-CoV-2 pandemic.
    2021 | PubMed
  70. Molecular Risk Stratification is Independent of EGFR Mutation Status in Identifying Early-Stage Non-Squamous Non-Small Cell Lung Cancer Patients at Risk for Recurrence and Likely to Benefit From Adjuvant Chemotherapy.
    2021 | PubMed
  71. Delaying surgery for patients with a previous SARS-CoV-2 infection.
    2020 | PubMed
  72. Incorporation of a Molecular Prognostic Classifier Improves Conventional Non-Small Cell Lung Cancer Staging.
    2019 | PubMed
  73. Intraoperative identification and treatment of a giant right coronary artery aneurysm.
    2018 | PubMed
  74. Wnt7A is a putative prognostic and chemosensitivity marker in human malignant pleural mesothelioma.
    2015 | PubMed
  75. A prognostic assay to identify patients at high risk of mortality despite small, node-negative lung tumors.
    2012 | PubMed
  76. Anal canal duplication associated with presacral cyst.
    2008 | PubMed
  77. Adjuvant chemotherapy for stage IA-IIA non-squamous, non-small-cell lung cancer identified as molecular high-risk by a 14-gene expression profile (AIM-HIGH): an international, randomised, phase 3 trial.
    2025 | PubMed
  78. Trans-Sternal Multilevel Corpectomy for Cervicothoracic Renal Cell Metastasis: 2-Dimensional Operative Video.
    2024 | PubMed
  79. SARS-CoV-2 infection of airway organoids reveals conserved use of Tetraspanin-8 by Ancestral, Delta, and Omicron variants.
    2023 | PubMed
  80. Effect of COVID-19 pandemic lockdowns on planned cancer surgery for 15 tumour types in 61 countries: an international, prospective, cohort study.
    2021 | PubMed
  81. Timing of surgery following SARS-CoV-2 infection: an international prospective cohort study.
    2021 | PubMed
  82. Comparison of Conventional TNM and Novel TNMB Staging Systems for Non-Small Cell Lung Cancer.
    2019 | PubMed
  83. Central Airway Obstruction Due to Tracheal Glomus Tumor.
    2018 | PubMed
  84. Management of Lung Cancer Invading the Superior Sulcus.
    2017 | PubMed
  85. The migrated liver transplantation candidate: insight into geographic disparities in liver distribution.
    2014 | PubMed
  86. IL11 is prognostic of survival in lung adenocarcinoma.
    2011 | UCSF Research Profile
  87. Clinical pulmonary autograft valves: pathologic evidence of adaptive remodeling in the aortic site.
    2004 | PubMed